Research output per year
Research output per year
Search results
-
2018
Preface
Zhang, F., Li, M., Wan, X. & Cai, Z., 2018, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10847 LNBI, p. VResearch output: Contribution to journal › Editorial
-
2017
Accelerating electron tomography reconstruction algorithm ICON using the intel Xeon Phi coprocessor on Tianhe-2 supercomputer
Wang, Z., Chen, Y., Zhang, J., Li, L., Wan, X., Liu, Z., Sun, F. & Zhang, F., 2017, Bioinformatics Research and Applications - 13th International Symposium, ISBRA 2017, Proceedings. Cai, Z., Daescu, O. & Li, M. (eds.). Springer Verlag, p. 258-269 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10330 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
A fully automatic geometric parameters determining method for electron tomography
Chen, Y., Wang, Z., Li, L., Wan, X., Sun, F. & Zhang, F., 2017, Bioinformatics Research and Applications - 13th International Symposium, ISBRA 2017, Proceedings. Cai, Z., Daescu, O. & Li, M. (eds.). Springer Verlag, p. 385-389 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10330 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM
Zhang, F., Chen, Y., Ren, F., Wang, X., Liu, Z. & Wan, X., 1 Mar 2017, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 2, p. 316-325 10 p.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
AuTom: A novel automatic platform for electron tomography reconstruction
Han, R., Wan, X., Wang, Z., Hao, Y., Zhang, J., Chen, Y., Gao, X., Liu, Z., Ren, F., Sun, F. & Zhang, F., Sept 2017, In: Journal of Structural Biology. 199, 3, p. 196-208 13 p.Research output: Contribution to journal › Article › peer-review
Open Access24 Citations (Scopus) -
AWGRS: Automates paired-end whole genome re-sequencing data analysis framework
Sun, X., Zhang, F., Wan, X. & Zhang, J., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Burrage, K., Zhu, Q., Liu, Y., Tian, T., Wang, Y., Hu, X. T., Jiang, Q., Song, J., Morishita, S., Burrage, K. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 910-916 7 p. 7822646. (Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
-
Computer-aided detection of pulmonary nodules in computed tomography images: Effect on observer performance
Liu, J. B., Wang, Y., Zhang, F., Ren, F., Liu, L. H. & He, W., Oct 2017, In: Journal of Medical Imaging and Health Informatics. 7, 6, p. 1205-1211 7 p.Research output: Contribution to journal › Article › peer-review
-
COMRANCE: A rapid method for Network-on-Chip design space exploration
Zhang, M., Shi, Y., Zhang, F. & Liu, Z., 4 Apr 2017, 2016 7th International Green and Sustainable Computing Conference, IGSC 2016. Institute of Electrical and Electronics Engineers Inc., 7892589. (2016 7th International Green and Sustainable Computing Conference, IGSC 2016).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
3 Citations (Scopus) -
Cost Reduction in Hybrid Clouds for Enterprise Computing
Zhou, B., Zhang, F., Wu, J. & Liu, Z., 13 Jul 2017, Proceedings - IEEE 37th International Conference on Distributed Computing Systems Workshops, ICDCSW 2017. Ferreira, J. E., Higashino, T. & Musaev, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 270-274 5 p. 7979828. (Proceedings - IEEE 37th International Conference on Distributed Computing Systems Workshops, ICDCSW 2017).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods
Wan, X., Katchalski, T., Churas, C., Ghosh, S., Phan, S., Lawrence, A., Hao, Y., Zhou, Z., Chen, R., Chen, Y., Zhang, F. & Ellisman, M. H., May 2017, In: Journal of Structural Biology. 198, 2, p. 103-115 13 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Energy efficiency in colocation data centers: A joint incentive mechanism approach
Wang, Y., Zhang, F., Ren, S., Liu, F., Wang, R. & Liu, Z., 2 Jul 2017, 2017 8th International Green and Sustainable Computing Conference, IGSC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-8 8 p. 8323564. (2017 8th International Green and Sustainable Computing Conference, IGSC 2017; vol. 2017-October).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
5 Citations (Scopus) -
Hardness of routing for minimizing superlinear polynomial cost in directed graphs
Shi, Y., Zhang, F. & Liu, Z., 2017, Theory and Applications of Models of Computation - 14th Annual Conference, TAMC 2017, Proceedings. Jager, G., Steila, S. & Gopal, T. V. (eds.). Springer Verlag, p. 571-585 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10185 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
-
Joint Optimization of Server and Network Resource Utilization in Cloud Data Centers
Zhou, B., Wu, J., Wang, L., Zhang, F. & Liu, Z., 2017, In: Proceedings - IEEE Global Communications Conference, GLOBECOM. 2018-January, p. 1-6 6 p.Research output: Contribution to journal › Conference article › peer-review
4 Citations (Scopus) -
Live cell single molecule-guided Bayesian localization super resolution microscopy
Xu, F., Zhang, M., He, W., Han, R., Xue, F., Liu, Z., Zhang, F., Lippincott-Schwartz, J. & Xu, P., 1 May 2017, In: Cell Research. 27, 5, p. 713-716 4 p.Research output: Contribution to journal › Letter › peer-review
Open Access28 Citations (Scopus) -
Online flow scheduling with deadline for energy conservation in data center networks
Zhou, B., Wu, J., Wang, L., Zhang, F. & Liu, Z., 2 Jul 2017, Proceedings - 2017 IEEE 23rd International Conference on Parallel and Distributed Systems, ICPADS 2017. IEEE Computer Society, p. 578-585 8 p. (Proceedings of the International Conference on Parallel and Distributed Systems - ICPADS; vol. 2017-December).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
PABO: Congestion mitigation via packet bounce
Shi, X., Wang, L., Zhang, F., Zheng, K. & Liu, Z., 28 Jul 2017, 2017 IEEE International Conference on Communications, ICC 2017. Debbah, M., Gesbert, D. & Mellouk, A. (eds.). Institute of Electrical and Electronics Engineers Inc., 7996995. (IEEE International Conference on Communications).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
3 Citations (Scopus) -
Real-time Task Scheduling for joint energy efficiency optimization in data centers
Wang, Y., Zhang, F., Wang, R., Shi, Y., Guo, H. & Liu, Z., 1 Sept 2017, 2017 IEEE Symposium on Computers and Communications, ISCC 2017. Institute of Electrical and Electronics Engineers Inc., p. 838-843 6 p. 8024631. (Proceedings - IEEE Symposium on Computers and Communications; vol. 0).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
9 Citations (Scopus) -
Resource optimization for survivable embedding of virtual clusters in cloud data centers
Zhou, B., Wu, J., Zhang, F. & Liu, Z., 2 Jul 2017, 2017 IEEE 36th International Performance Computing and Communications Conference, IPCCC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-8 8 p. (2017 IEEE 36th International Performance Computing and Communications Conference, IPCCC 2017; vol. 2018-January).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
Towards the Tradeoffs in Designing Data Center Network Architectures
Li, D., Wu, J., Liu, Z. & Zhang, F., 1 Jan 2017, In: IEEE Transactions on Parallel and Distributed Systems. 28, 1, p. 260-273 14 p., 7779314.Research output: Contribution to journal › Article › peer-review
Open Access23 Citations (Scopus) -
2016
A local-optimization refinement algorithm in single particle analysis for macromolecular complex with multiple rigid modules
Shan, H., Wang, Z., Zhang, F., Xiong, Y., Yin, C. C. & Sun, F., 1 Jan 2016, In: Protein and Cell. 7, 1, p. 46-62 17 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
FIRT: Filtered iterative reconstruction technique with information restoration
Chen, Y., Zhang, Y., Zhang, K., Deng, Y., Wang, S., Zhang, F. & Sun, F., 1 Jul 2016, In: Journal of Structural Biology. 195, 1, p. 49-61 13 p.Research output: Contribution to journal › Article › peer-review
Open Access23 Citations (Scopus) -
HDEER: A distributed routing scheme for energy-efficient networking
Zhou, B., Zhang, F., Wang, L., Hou, C., Anta, A. F., Vasilakos, A. V., Wang, Y., Wu, J. & Liu, Z., May 2016, In: IEEE Journal on Selected Areas in Communications. 34, 5, p. 1713-1727 15 p., 7439745.Research output: Contribution to journal › Article › peer-review
21 Citations (Scopus) -
ICON: 3D reconstruction with ‘missing-information’ restoration in biological electron tomography
Deng, Y., Chen, Y., Zhang, Y., Wang, S., Zhang, F. & Sun, F., 1 Jul 2016, In: Journal of Structural Biology. 195, 1, p. 100-112 13 p.Research output: Contribution to journal › Article › peer-review
Open Access63 Citations (Scopus) -
Multi-resource energy-efficient routing in cloud data centers with network-As-A-service
Wang, L., Anta, A. F., Zhang, F., Wu, J. & Liu, Z., 11 Feb 2016, 20th IEEE Symposium on Computers and Communication, ISCC 2015. Institute of Electrical and Electronics Engineers Inc., p. 694-699 6 p. 7405595. (Proceedings - IEEE Symposium on Computers and Communications; vol. 2016-February).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access8 Citations (Scopus) -
2015
A novel fully automatic scheme for fiducial marker-based alignment in electron tomography
Han, R., Wang, L., Liu, Z., Sun, F. & Zhang, F., Dec 2015, In: Journal of Structural Biology. 192, 3, p. 403-417 15 p.Research output: Contribution to journal › Article › peer-review
39 Citations (Scopus) -
Bayesian localization microscopy based on intensity distribution of fluorophores
Xu, F., Zhang, M., Liu, Z., Xu, P. & Zhang, F., Mar 2015, In: Protein and Cell. 6, 3, p. 211-220 10 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
BSIRT: A block-iterative SIRT parallel algorithm using curvilinear projection model
Zhang, F., Zhang, J., Lawrence, A., Ren, F., Wang, X., Liu, Z. & Wan, X., 1 Mar 2015, In: IEEE Transactions on Nanobioscience. 14, 2, p. 229-236 8 p., 7039234.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric
Han, R., Wang, L., Xu, F., Zhang, Y., Zhang, M., Liu, Z., Ren, F. & Zhang, F., 13 Jan 2015, In: BMC Biophysics. 8, 1, 1.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Dual-centric data center network architectures
Li, D., Wu, J., Liu, Z. & Zhang, F., 8 Dec 2015, Proceedings - 2015 44th International Annual Conference on Parallel Processing, ICPP 2015. Institute of Electrical and Electronics Engineers Inc., p. 679-688 10 p. 7349623. (Proceedings of the International Conference on Parallel Processing; vol. 2015-December).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
10 Citations (Scopus) -
FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter
Zhou, Z., Li, Y., Zhang, F. & Wan, X., 2015, In: Bio-Medical Materials and Engineering. 26, p. S1409-S1415Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Joint power optimization through VM placement and flow scheduling in data centers
Li, D., Wu, J., Liu, Z. & Zhang, F., 20 Jan 2015, 2014 IEEE 33rd International Performance Computing and Communications Conference, IPCCC 2014. Institute of Electrical and Electronics Engineers Inc., 7017088. (2014 IEEE 33rd International Performance Computing and Communications Conference, IPCCC 2014; vol. 2014-January).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
5 Citations (Scopus) -
Randomized oblivious integral routing for minimizing power cost
Shi, Y., Zhang, F., Wu, J. & Liu, Z., 23 Nov 2015, In: Theoretical Computer Science. 607, p. 221-246 26 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Scheduling for energy minimization on restricted parallel processors
Jin, X., Zhang, F., Fan, L., Song, Y. & Liu, Z., 1 Jul 2015, In: Journal of Parallel and Distributed Computing. 81-82, p. 36-46 11 p.Research output: Contribution to journal › Article › peer-review
11 Citations (Scopus) -
Truthful strategy and resource integration for multi-tenant data center demand response
Wang, Y., Zhang, F. & Liu, Z., 2015, Frontiers in Algorithmics - 9th International Workshop, FAW 2015, Proceedings. Yap, C. & Wang, J. (eds.). Springer Verlag, p. 259-270 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9130).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
7 Citations (Scopus) -
2014
A hop-by-hop energy efficient distributed routing cheme
Hou, C., Zhang, F., Anta, A. F., Wang, L. & Liu, Z., Jan 2014, In: Performance Evaluation Review. 41, 3, p. 101-106 6 p.Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
A marker-free automatic alignment method based on scale-invariant features
Han, R., Zhang, F., Wan, X., Fernández, J. J., Sun, F. & Liu, Z., Apr 2014, In: Journal of Structural Biology. 186, 1, p. 167-180 14 p.Research output: Contribution to journal › Article › peer-review
32 Citations (Scopus) -
An improved correlation method based on rotation invariant feature for automatic particle selection
Chen, Y., Ren, F., Wan, X., Wang, X. & Zhang, F., 2014, Bioinformatics Research and Applications - 10th International Symposium, ISBRA 2014, Proceedings. Springer Verlag, p. 114-125 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8492 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Citation (Scopus) -
A parallel scheme for three-dimensional reconstruction in large-field electron tomography
Zhang, J., Wan, X., Zhang, F., Ren, F., Wang, X. & Liu, Z., 2014, Bioinformatics Research and Applications - 10th International Symposium, ISBRA 2014, Proceedings. Springer Verlag, p. 102-113 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8492 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus) -
DEER: A distributed routing scheme for achieving network energy efficiency
Zhou, B., Wang, L., Zhang, F., Jin, X. & Liu, Z., 30 Jan 2014, 2014 IEEE 20th International Workshop on Local and Metropolitan Area Networks, LANMAN 2014. Institute of Electrical and Electronics Engineers Inc., 7028631. (2014 IEEE 20th International Workshop on Local and Metropolitan Area Networks, LANMAN 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Citation (Scopus) -
Energy-efficient flow scheduling and routing with hard deadlines in data center networks
Wang, L., Zhang, F., Zheng, K., Vasilakos, A. V., Ren, S. & Liu, Z., 29 Aug 2014, Proceedings - International Conference on Distributed Computing Systems. Institute of Electrical and Electronics Engineers Inc., p. 248-257 10 p. 6888901. (Proceedings - International Conference on Distributed Computing Systems).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access54 Citations (Scopus) -
GreenDCN: A general framework for achieving energy efficiency in data center networks
Wang, L., Zhang, F., Aroca, J. A., Vasilakos, A. V., Zheng, K., Hou, C., Li, D. & Liu, Z., Jan 2014, In: IEEE Journal on Selected Areas in Communications. 32, 1, p. 4-15 12 p., 140102.Research output: Contribution to journal › Article › peer-review
Open Access162 Citations (Scopus) -
Joint virtual machine assignment and traffic engineering for green data center networks
Wang, L., Zhang, F., Vasilakos, A. V., Hou, C. & Liu, Z., Jan 2014, In: Performance Evaluation Review. 41, 3, p. 107-112 6 p.Research output: Contribution to journal › Article › peer-review
57 Citations (Scopus) -
Oblivious integral routing for minimizing the quadratic polynomial cost
Shi, Y., Zhang, F. & Liu, Z., 2014, Frontiers in Algorithmics - 8th International Workshop, FAW 2014, Proceedings. Springer Verlag, p. 216-228 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8497 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Citation (Scopus) -
Polylogarithmic competitive algorithm for energy minimization in optical WDM networks
Shi, Y., Zhang, F. & Liu, Z., 9 Dec 2014, Proceedings - IEEE 22nd International. IEEE Computer Society, p. 197-202 6 p. 6980378. (Proceedings - International Conference on Network Protocols, ICNP).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
4 Citations (Scopus) -
Prediction of siRNA efficacy using BP neural network
Wang, X. & Zhang, F., 2014, Machine Tool Technology, Mechatronics and Information Engineering. Wang, Z., Guo, L., Tan, J., Yang, D., Yang, D., Yang, K., Yang, D., Yang, D. & Yang, D. (eds.). Trans Tech Publications Ltd., p. 5341-5345 5 p. (Applied Mechanics and Materials; vol. 644-650).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
-
2013
A fast calculation strategy of density function in ISAF reconstruction algorithm
Wang, G. M., Zhang, F., Chu, Q., Fan, L. Y., Sun, F. & Liu, Z. Y., Sept 2013, In: Science China Information Sciences. 56, 9, p. 1-12 12 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
A universally stable and energy-efficient scheduling protocol for packet switching network
Shi, Y., Zhang, F. & Liu, Z., 2013, Proceedings - IEEE 12th International Symposium on Network Computing and Applications, NCA 2013. p. 118-126 9 p. 6623651. (Proceedings - IEEE 12th International Symposium on Network Computing and Applications, NCA 2013).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Citation (Scopus) -
Computational methods in cryoelectron microscopy 3D structure reconstruction
Zhang, F., Wan, X. & Liu, Z., 1 Jan 2013, Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics. wiley, p. 231-251 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
-
Contrast transfer function correction model based on sine and Gaussian modulation and spline interpolation
Wang, G., Zhang, F., Fan, L., Sun, F. & Liu, Z., Apr 2013, In: Jisuanji Yanjiu yu Fazhan/Computer Research and Development. 50, 4, p. 808-814 7 p.Research output: Contribution to journal › Article › peer-review
-
Discrete min-energy scheduling on restricted parallel processors
Jin, X., Zhang, F. & Liu, Z., 2013, Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium Workshops and PhD Forum, IPDPSW 2013. IEEE Computer Society, p. 2226-2229 4 p. 6651136. (Proceedings - IEEE 27th International Parallel and Distributed Processing Symposium Workshops and PhD Forum, IPDPSW 2013).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus)
