Research output per year
Research output per year
Search results
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2024
Partial order relation-based gene ontology embedding improves protein function prediction
Li, W., Wang, B., Dai, J., Kou, Y., Chen, X., Pan, Y., Hu, S. & Xu, Z. Z., 1 Mar 2024, In: Briefings in Bioinformatics. 25, 2, bbae077.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
2022
SU(2) Lie-Poisson algebra and its descendants
Dai, J., Ioannidou, T. & Niemi, A. J., 1 Sept 2022, In: Physical Review D. 106, 5, 054514.Research output: Contribution to journal › Article › peer-review
Open Access -
2021
Autonomous topological time crystals and knotty molecular motors
Dai, J., Peng, X. & Niemi, A. J., Jan 2021, In: Journal of Physics Condensed Matter. 33, 1, 015702.Research output: Contribution to journal › Article › peer-review
Open Access -
Rotation by deformation and time-crystalline dynamics of cyclopropane molecule
Peng, X., Dai, J. & Niemi, A. J., Jul 2021, In: New Journal of Physics. 23, 7, 073024.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Vortex precession and exchange in a Bose-Einstein condensate
Garaud, J., Dai, J. & Niemi, A. J., Jul 2021, In: Journal of High Energy Physics. 2021, 7, 157.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
2020
Application of topological soliton in modeling protein folding: Recent progress and perspective
Peng, X. B., Liu, J. J., Dai, J., Niemi, A. J. & He, J. F., Sept 2020, In: Chinese Physics B. 29, 10, 108705.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Classical Hamiltonian time crystals-general theory and simple examples
Dai, J., Niemi, A. J. & Peng, X., Aug 2020, In: New Journal of Physics. 22, 8, 085006.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Provenance of classical Hamiltonian time crystals
Alekseev, A., Dai, J. & Niemi, A. J., 1 Aug 2020, In: Journal of High Energy Physics. 2020, 8, 35.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
2019
Can the geometry of all-atom protein trajectories be reconstructed from the knowledge of C α time evolution? A study of peptide plane O and side chain C β atoms
Liu, J., Dai, J., He, J., Peng, X. & Niemi, A. J., 14 Jun 2019, In: Journal of Chemical Physics. 150, 22, 225103.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Intrinsic protein geometry with application to non-proline cis peptide planes
Hou, Y., Dai, J., He, J., Niemi, A. J., Peng, X. & Ilieva, N., 15 Jan 2019, In: Journal of Mathematical Chemistry. 57, 1, p. 263-279 17 p.Research output: Contribution to journal › Article › peer-review
10 Citations (Scopus) -
Truncated dynamics, ring molecules, and mechanical time crystals
Dai, J., Niemi, A. J., Peng, X. & Wilczek, F., 25 Feb 2019, In: Physical Review A. 99, 2, 023425.Research output: Contribution to journal › Article › peer-review
Open Access13 Citations (Scopus) -
2017
Multistage modeling of protein dynamics with monomeric Myc oncoprotein as an example
Liu, J., Dai, J., He, J., Niemi, A. J. & Ilieva, N., 9 Mar 2017, In: Physical Review E. 95, 3, 032406.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
2016
Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example
Dai, J., Niemi, A. J., He, J., Sieradzan, A. & Ilieva, N., 16 Mar 2016, In: Physical Review E. 93, 3, 032409.Research output: Contribution to journal › Article › peer-review
Open Access13 Citations (Scopus) -
Conformational landscape of an amyloid intra-cellular domain and Landau-Ginzburg-Wilson paradigm in protein dynamics
Dai, J., Niemi, A. J. & He, J., 28 Jul 2016, In: Journal of Chemical Physics. 145, 4, 045103.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
2015
Aspects of structural landscape of human islet amyloid polypeptide
He, J., Dai, J., Li, J., Peng, X. & Niemi, A. J., 28 Jan 2015, In: Journal of Chemical Physics. 142, 4, 045102.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Solitons and protein folding: An in Silico experiment
Ilieva, N., Dai, J., Sieradzan, A. & Niemi, A., 28 Oct 2015, Application of Mathematics in Technical and Natural Sciences: 7th International Conference for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS 2015. Todorov, M. D. (ed.). American Institute of Physics Inc., 030006. (AIP Conference Proceedings; vol. 1684).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus)
