Jianfeng He

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134

Citations
6

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20052025

Research activity per year

23 Article
3 Conference contribution
1 Review article

27 results

2025
Motif-driven dynamics and intermediates during unfolding of multi-domain BphC enzyme
He, J. & Li, J., 21 Jan 2025, In: Journal of Chemical Physics. 162, 3, 035101.
Research output: Contribution to journal › Article › peer-review
Mentions
News Mentions: 1
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2024
Unraveling the complexity of Exendin-4 folding through two distinct pathways
Gao, Z., He, J., Li, J. & Leung, K., Feb 2024, In: Journal of Mathematical Chemistry. 62, 2, p. 356-366 11 p.
Research output: Contribution to journal › Article › peer-review
2023
Dynamic structural analysis-based epitope prediction of Exendin-4 in aqueous solution
He, J., Li, J. & Leung, K., Aug 2023, In: Physical Review E. 108, 2, 024403.
Research output: Contribution to journal › Article › peer-review
Captures
Readers: 2
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2020
Application of topological soliton in modeling protein folding: Recent progress and perspective
Peng, X. B., Liu, J. J., Dai, J., Niemi, A. J. & He, J. F., Sept 2020, In: Chinese Physics B. 29, 10, 108705.
Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus)
Citations
Citation Indexes: 2
Captures
Readers: 5
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2019
A novel 3D visualization approach: A proof-of-concept study on the histidine residues in myoglobin
Hou, Y., Niemi, A. J., Peng, X., He, J. & Ilieva, N., 24 Oct 2019, Application of Mathematics in Technical and Natural Sciences: 11th International Conference for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS 2019. Todorov, M. D. (ed.). American Institute of Physics Inc., 080004. (AIP Conference Proceedings; vol. 2164).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Can the geometry of all-atom protein trajectories be reconstructed from the knowledge of C α time evolution? A study of peptide plane O and side chain C β atoms
Liu, J., Dai, J., He, J., Peng, X. & Niemi, A. J., 14 Jun 2019, In: Journal of Chemical Physics. 150, 22, 225103.
Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus)
Citations
Citation Indexes: 3
Captures
Readers: 10
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Intrinsic protein geometry with application to non-proline cis peptide planes
Hou, Y., Dai, J., He, J., Niemi, A. J., Peng, X. & Ilieva, N., 15 Jan 2019, In: Journal of Mathematical Chemistry. 57, 1, p. 263-279 17 p.
Research output: Contribution to journal › Article › peer-review
10 Citations (Scopus)
Citations
Citation Indexes: 10
Captures
Readers: 4
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Study of correlations between protein peptide plane dynamics and side chain dynamics
Hou, Y., Liu, J., He, J., Peng, X. & Niemi, A. J., Apr 2019, In: PLoS ONE. 14, 4, e0215141.
Research output: Contribution to journal › Article › peer-review

Open Access
Captures
Readers: 9
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2018
Conformational ensemble of B Chain in T₆ human insulin based on the landau free energy
Lei, Y., He, J., Liu, J. & Li, J., May 2018, In: Acta Physica Polonica A. 133, 5, p. 1261-1265 5 p.
Research output: Contribution to journal › Article › peer-review

Open Access
1 Citation (Scopus)
Citations
Citation Indexes: 1
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Sampling in in silico biomolecular studies: single-stage experiments vs multiscale approaches
Ilieva, N., Liu, J., Peng, X., He, J., Niemi, A., Petkov, P. & Litov, L., 2018, Large-Scale Scientific Computing - 11th International Conference, LSSC 2017, Revised Selected Papers. Lirkov, I. & Margenov, S. (eds.). Springer Verlag, p. 507-515 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10665 LNCS).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Captures
Readers: 2
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The ensemble folding dynamics of EF-hand domain in parvalbumin from a Monte Carlo simulation
He, J., Zhao, Y. & Li, J., 1 Nov 2018, In: Journal of Mathematical Chemistry. 56, 10, p. 3115-3125 11 p.
Research output: Contribution to journal › Article › peer-review
Captures
Readers: 1
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The structural modeling of EF-hand motifs in parvalbumin
Zhao, Y., He, J. & Li, J., 1 Sept 2018, In: Journal of Mathematical Chemistry. 56, 8, p. 2525-2536 12 p.
Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus)
Citations
Citation Indexes: 3
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2017
Multistage modeling of protein dynamics with monomeric Myc oncoprotein as an example
Liu, J., Dai, J., He, J., Niemi, A. J. & Ilieva, N., 9 Mar 2017, In: Physical Review E. 95, 3, 032406.
Research output: Contribution to journal › Article › peer-review

Open Access
8 Citations (Scopus)
Citations
Citation Indexes: 8
Captures
Readers: 13
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2016
Are there folding pathways in the functional stages of intrinsically disordered proteins?
Ilieva, N., Liu, J., Marinova, R., Petkov, P., Litov, L., He, J. & Niemi, A. J., 13 Oct 2016, Application of Mathematics in Technical and Natural Sciences: 8th International Conference for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS 2016. Todorov, M. D. (ed.). American Institute of Physics Inc., 110008. (AIP Conference Proceedings; vol. 1773).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Citations (Scopus)
Citations
Citation Indexes: 2
Captures
Readers: 5
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Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example
Dai, J., Niemi, A. J., He, J., Sieradzan, A. & Ilieva, N., 16 Mar 2016, In: Physical Review E. 93, 3, 032409.
Research output: Contribution to journal › Article › peer-review

Open Access
13 Citations (Scopus)
Citations
Citation Indexes: 13
Captures
Readers: 10
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Conformational landscape of an amyloid intra-cellular domain and Landau-Ginzburg-Wilson paradigm in protein dynamics
Dai, J., Niemi, A. J. & He, J., 28 Jul 2016, In: Journal of Chemical Physics. 145, 4, 045103.
Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus)
Citations
Citation Indexes: 7
Captures
Readers: 2
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2015
Aspects of structural landscape of human islet amyloid polypeptide
He, J., Dai, J., Li, J., Peng, X. & Niemi, A. J., 28 Jan 2015, In: Journal of Chemical Physics. 142, 4, 045102.
Research output: Contribution to journal › Article › peer-review

Open Access
6 Citations (Scopus)
Citations
Citation Indexes: 6
Captures
Readers: 18
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Clustering and percolation in protein loop structures
Peng, X., He, J. & Niemi, A. J., 29 Oct 2015, In: BMC Structural Biology. 15, 1, 22.
Research output: Contribution to journal › Article › peer-review

Open Access
6 Citations (Scopus)
Citations
Citation Indexes: 6
Captures
Readers: 15
Social Media
Shares, Likes & Comments: 11
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2013
The nature of stresses in a giant static granular column
Ge, B. L., Shi, Q. F., Ram, C., He, J. F. & Ma, S. P., Apr 2013, In: Chinese Physics Letters. 30, 4, 048101.
Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus)
Citations
Citation Indexes: 3
Captures
Readers: 7
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2008
The QCT calculation of the rate constants for the N(⁴S)+O ₂(X³∑_g ^- ) →nO(X ²Π)+O(³P) reaction
He, J. & Li, J., Mar 2008, In: Journal of Mathematical Chemistry. 43, 3, p. 1184-1192 9 p.
Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus)
Citations
Citation Indexes: 1
Captures
Readers: 4
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The reaction probability and the reaction cross-section of the N( ⁴S)+O₂(X³Σ_g^_) → NO(X²Π)+O(³P) reaction
He, J. & Li, J., Feb 2008, In: Journal of Mathematical Chemistry. 43, 2, p. 693-700 8 p.
Research output: Contribution to journal › Article › peer-review
Captures
Readers: 2
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2007
Recent progress in symplectic algorithms for use in quantum systems
Liu, X. S., Qi, Y. Y., He, J. F. & Ding, P. Z., Feb 2007, In: Communications in Computational Physics. 2, 1, p. 1-53 53 p.
Research output: Contribution to journal › Review article › peer-review
63 Citations (Scopus)
2006
Application of symplectic algorithm in the quasi-classical trajectory calculation of N + O₂ reaction
He, J. F., Aug 2006, In: Beijing Ligong Daxue Xuebao/Transaction of Beijing Institute of Technology. 26, 8, p. 737-740 4 p.
Research output: Contribution to journal › Article › peer-review
The reaction probability and the reaction cross-section of N + O ₂ → NO + O reaction computed by the 6th-order explicit symplectic algorithm
He, J. & Li, J., 20 Dec 2006, In: Bulletin of the Korean Chemical Society. 27, 12, p. 1976-1980 5 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Citations
Citation Indexes: 1
Captures
Readers: 2
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Thermal rate constants of the N(⁴S)+O₂(X ³Σ_g^-)→ NO(X²Π) +O(³P) reaction on the ²A′ potential energy surface
He, J. F., Chen, F. & Li, J., 1 Apr 2006, In: Chinese Physics Letters. 23, 4, p. 828-831 4 p.
Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus)
Citations
Citation Indexes: 1
Captures
Readers: 2
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2005
A quasiclassical trajectory study for the N(⁴S) + O ₂(X³Σ_g^-) → NO(X ²Π) + O(³P) atmospheric reaction based on a new ground potential energy surface
He, J., Liu, S., Liu, X. & Ding, P., 8 Aug 2005, In: Chemical Physics. 315, 1-2, p. 87-96 10 p.
Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus)
Citations
Citation Indexes: 3
Captures
Readers: 3
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Computation of quasiclassical trajectories by symplectic algorithm for the N(⁴S) + O₂(X³Σ_g^-) → NO(X²Π) + O(³P) reaction system
He, J., Hua, W., Liu, X. & Ding, P., Jan 2005, In: Journal of Mathematical Chemistry. 37, 2, p. 127-138 12 p.
Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus)
Citations
Citation Indexes: 4
Captures
Readers: 1
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Jianfeng He

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