Research output per year
Research output per year
Search results
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2016
iEnhancer-PsedeKNC: Identification of enhancers and their subgroups based on Pseudo degenerate kmer nucleotide composition
Liu, B., 12 Dec 2016, In: Neurocomputing. 217, p. 46-52 7 p.Research output: Contribution to journal › Article › peer-review
20 Citations (Scopus) -
IMiRNA-PseDPC: MicroRNA precursor identification with a pseudo distance-pair composition approach
Liu, B., Fang, L., Liu, F., Wang, X. & Chou, K. C., 2 Jan 2016, In: Journal of Biomolecular Structure and Dynamics. 34, 1, p. 220-232 13 p.Research output: Contribution to journal › Article › peer-review
Open Access134 Citations (Scopus) -
IMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions
Chen, J., Wang, X. & Liu, B., 12 Jan 2016, In: Scientific Reports. 6, 19062.Research output: Contribution to journal › Article › peer-review
Open Access53 Citations (Scopus) -
IRSpot-DACC: A computational predictor for recombination hot/cold spots identification based on dinucleotide-based auto-cross covariance
Liu, B., Liu, Y., Jin, X., Wang, X. & Liu, B., 19 Sept 2016, In: Scientific Reports. 6, 33483.Research output: Contribution to journal › Article › peer-review
Open Access34 Citations (Scopus) -
Protein remote homology detection by combining pseudo Dimer composition with an ensemble learning method
Liu, B., Chen, J. & Wang, S., 1 Jun 2016, In: Current Proteomics. 13, 2, p. 86-91 6 p.Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus) -
Recombination spot identification Based on gapped k-mers
Wang, R., Xu, Y. & Liu, B., 31 Mar 2016, In: Scientific Reports. 6, 23934.Research output: Contribution to journal › Article › peer-review
Open Access30 Citations (Scopus)
- Citations
- Citation Indexes: 30
- Captures
- Readers: 46
- Mentions
- Blog Mentions: 6
- News Mentions: 1
- References: 2
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repRNA: a web server for generating various feature vectors of RNA sequences
Liu, B., Liu, F., Fang, L., Wang, X. & Chou, K. C., 1 Feb 2016, In: Molecular Genetics and Genomics. 291, 1, p. 473-481 9 p.Research output: Contribution to journal › Article › peer-review
149 Citations (Scopus) -
2015
Application of learning to rank to protein remote homology detection
Liu, B., Chen, J. & Wang, X., 18 Dec 2015, In: Bioinformatics. 31, 21, p. 3492-3498 7 p.Research output: Contribution to journal › Article › peer-review
Open Access89 Citations (Scopus) -
DNA binding protein identification by combining pseudo amino acid composition and profile-based protein representation
Liu, B., Wang, S. & Wang, X., 20 Oct 2015, In: Scientific Reports. 5, 15479.Research output: Contribution to journal › Article › peer-review
Open Access123 Citations (Scopus) -
Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach
Xu, R., Zhou, J., Liu, B., He, Y., Zou, Q., Wang, X. & Chou, K. C., 3 Aug 2015, In: Journal of Biomolecular Structure and Dynamics. 33, 8, p. 1720-1730 11 p.Research output: Contribution to journal › Article › peer-review
Open Access77 Citations (Scopus) -
Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy
Liu, B., Fang, L., Wang, S., Wang, X., Li, H. & Chou, K. C., 21 Nov 2015, In: Journal of Theoretical Biology. 385, p. 153-159 7 p.Research output: Contribution to journal › Article › peer-review
155 Citations (Scopus) -
Identification of real microRNA precursors with a pseudo structure status composition approach
Liu, B., Fang, L., Liu, F., Wang, X., Chen, J. & Chou, K. C., 30 Mar 2015, In: PLoS ONE. 10, 3, e0121501.Research output: Contribution to journal › Article › peer-review
Open Access236 Citations (Scopus) -
Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation
Xu, R., Zhou, J., Wang, H., He, Y., Wang, X. & Liu, B., 6 Feb 2015, In: BMC Systems Biology. 9, 1, S10.Research output: Contribution to journal › Article › peer-review
Open Access93 Citations (Scopus) -
MiRNA-dis: MicroRNA precursor identification based on distance structure status pairs
Liu, B., Fang, L., Chen, J., Liu, F. & Wang, X., 1 Apr 2015, In: Molecular BioSystems. 11, 4, p. 1194-1204 11 p.Research output: Contribution to journal › Article › peer-review
72 Citations (Scopus) -
Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis
Liu, B., Chen, J. & Wang, X., 23 Oct 2015, In: Molecular Genetics and Genomics. 290, 5, p. 1919-1931 13 p.Research output: Contribution to journal › Article › peer-review
65 Citations (Scopus) -
PseDNA-Pro: DNA-binding protein identification by combining chou's PseAAC and Physicochemical distance transformation
Liu, B., Xu, J., Fan, S., Xu, R., Zhou, J. & Wang, X., Jan 2015, In: Molecular Informatics. 34, 1, p. 8-17 10 p.Research output: Contribution to journal › Article › peer-review
150 Citations (Scopus) -
Pse-in-One: A web server for generating various modes of pseudo components of DNA, RNA, and protein sequences
Liu, B., Liu, F., Wang, X., Chen, J., Fang, L. & Chou, K. C., 2015, In: Nucleic Acids Research. 43, W1, p. W65-W71Research output: Contribution to journal › Article › peer-review
Open Access687 Citations (Scopus) -
RepDNA: A Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
Liu, B., Liu, F., Fang, L., Wang, X. & Chou, K. C., 15 Apr 2015, In: Bioinformatics. 31, 8, p. 1307-1309 3 p.Research output: Contribution to journal › Article › peer-review
Open Access254 Citations (Scopus) -
Word Embedding Composition for Data Imbalances in Sentiment and Emotion Classification
Xu, R., Chen, T., Xia, Y., Lu, Q., Liu, B. & Wang, X., 1 Apr 2015, In: Cognitive Computation. 7, 2, p. 226-240 15 p.Research output: Contribution to journal › Article › peer-review
78 Citations (Scopus) -
2014
Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
Liu, B., Zhang, D., Xu, R., Xu, J., Wang, X., Chen, Q., Dong, Q. & Chou, K. C., 15 Feb 2014, In: Bioinformatics. 30, 4, p. 472-479 8 p.Research output: Contribution to journal › Article › peer-review
Open Access273 Citations (Scopus) -
EnDNA-Prot: Identification of DNA-binding proteins by applying ensemble learning
Xu, R., Zhou, J., Liu, B., Yao, L., He, Y., Zou, Q. & Wang, X., 2014, In: BioMed Research International. 2014, 294279.Research output: Contribution to journal › Article › peer-review
Open Access42 Citations (Scopus) -
Exploratory predicting protein folding model with random forest and hybrid features
Zhao, X., Zou, Q., Liu, B. & Liu, X., 1 Dec 2014, In: Current Proteomics. 11, 4, p. 289-299 11 p.Research output: Contribution to journal › Article › peer-review
58 Citations (Scopus) -
IDNA-Prot|dis: Identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition
Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X. & Chou, K. C., 3 Sept 2014, In: PLoS ONE. 9, 9, e106691.Research output: Contribution to journal › Article › peer-review
Open Access282 Citations (Scopus) -
Protein binding site prediction by combining hidden markov support vector machine and profile-based propensities
Liu, B., Liu, B., Liu, F. & Wang, X., 2014, In: The Scientific World Journal. 2014, 464093.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Using distances between Top-n-gram and residue pairs for protein remote homology detection
Liu, B., Xu, J., Zou, Q., Xu, R., Wang, X. & Chen, Q., 2014, In: BMC Bioinformatics. 15, S3.Research output: Contribution to journal › Article › peer-review
Open Access88 Citations (Scopus) -
2013
An approach for identifying cytokines based on a novel ensemble classifier
Zou, Q., Wang, Z., Guan, X., Liu, B., Wu, Y. & Lin, Z., 2013, In: BioMed Research International. 2013, 686090.Research output: Contribution to journal › Article › peer-review
Open Access84 Citations (Scopus) -
Protein remote homology detection by combining chou's pseudo amino acid composition and profile-based protein representation
Liu, B., Wang, X., Zou, Q., Dong, Q. & Chen, Q., Oct 2013, In: Molecular Informatics. 32, 9-10, p. 775-782 8 p.Research output: Contribution to journal › Article › peer-review
102 Citations (Scopus) -
QChIPat: A quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions
Liu, B., Yi, J., SV, A., Lan, X., Ma, Y., Huang, T. H. M., Leone, G. & Jin, V. X., 9 Dec 2013, In: BMC Genomics. 14, SUPP 8, S3.Research output: Contribution to journal › Article › peer-review
Open Access27 Citations (Scopus) -
2012
Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection
Liu, B., Wang, X., Chen, Q., Dong, Q. & Lan, X., 28 Sept 2012, In: PLoS ONE. 7, 9, e46633.Research output: Contribution to journal › Article › peer-review
Open Access106 Citations (Scopus) -
2011
Analysis on health information extracted from an urban professional population in Beijing
Zhang, T. M., Zhu, L., Luo, S. L., Han, Y. W., Zhang, Y., Yang, S. W., Liu, A. N., Ma, L. J., Zhao, Y. Y., Zhang, Y., Liu, B., Jia, H. B. & Liu, Y. J., Jan 2011, In: Chinese Medical Journal. 124, 2, p. 189-193 5 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
An improved profile-level domain linker propensity index for protein domain boundary prediction
Zhang, Y., Liu, B., Dong, Q. & Jin, V. X., Jan 2011, In: Protein and Peptide Letters. 18, 1, p. 7-16 10 p.Research output: Contribution to journal › Article › peer-review
15 Citations (Scopus) -
Protein remote homology detection and fold recognition based on features extracted from frequency profiles
Lin, L., Liu, B., Wang, X., Wang, X. & Tang, B., 2011, In: Journal of Computers (Finland). 6, 2, p. 321-328 8 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
2009
Exploiting three kinds of interface propensities to identify protein binding sites
Liu, B., Wang, X., Lin, L., Dong, Q. & Wang, X., Aug 2009, In: Computational Biology and Chemistry. 33, 4, p. 303-311 9 p.Research output: Contribution to journal › Article › peer-review
30 Citations (Scopus) -
Prediction of protein binding sites in protein structures using hidden Markov support vector machine
Liu, B., Wang, X., Lin, L., Tang, B., Dong, Q. & Wang, X., 20 Nov 2009, In: BMC Bioinformatics. 10, 381.Research output: Contribution to journal › Article › peer-review
Open Access50 Citations (Scopus) -
2008
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
Liu, B., Wang, X., Lin, L., Dong, Q. & Wang, X., 1 Dec 2008, In: BMC Bioinformatics. 9, 510.Research output: Contribution to journal › Article › peer-review
Open Access132 Citations (Scopus)
