TY - GEN
T1 - Super-Resolved q-Space Deep Learning
AU - Ye, Chuyang
AU - Qin, Yu
AU - Liu, Chenghao
AU - Li, Yuxing
AU - Zeng, Xiangzhu
AU - Liu, Zhiwen
N1 - Publisher Copyright:
© 2019, Springer Nature Switzerland AG.
PY - 2019
Y1 - 2019
N2 - q-Space deep learning (q-DL) enables accurate estimation of tissue microstructure from diffusion magnetic resonance imaging (dMRI) scans with signals undersampled in the q-space. However, in many scenarios, such as clinical settings, the quality of tissue microstructure estimation is limited not only by q-space undersampling but also by low spatial resolution. Therefore, in this work, we extend q-DL to super-resolved tissue microstructure estimation, which is referred to as super-resolved q-DL. In super-resolved q-DL, low resolution (LR) image patches of diffusion signals are mapped directly to high resolution (HR) tissue microstructure patches with a deep network. Specifically, inspired by the successful integration of sparse representation into q-DL, we have designed an end-to-end deep network that comprises two functional components. The first component computes a sparse representation of diffusion signals at each voxel via convolutions, where the network structure is constructed by unfolding an iterative optimization process. In the second component, convolutional layers with different kernel sizes are used to compute HR tissue microstructure patches from the LR patches of sparse representation. The weights in the two components are learned jointly. Experiments were performed on brain dMRI data with a reduced number of diffusion gradients and a low spatial resolution, where the proposed approach outperforms competing methods.
AB - q-Space deep learning (q-DL) enables accurate estimation of tissue microstructure from diffusion magnetic resonance imaging (dMRI) scans with signals undersampled in the q-space. However, in many scenarios, such as clinical settings, the quality of tissue microstructure estimation is limited not only by q-space undersampling but also by low spatial resolution. Therefore, in this work, we extend q-DL to super-resolved tissue microstructure estimation, which is referred to as super-resolved q-DL. In super-resolved q-DL, low resolution (LR) image patches of diffusion signals are mapped directly to high resolution (HR) tissue microstructure patches with a deep network. Specifically, inspired by the successful integration of sparse representation into q-DL, we have designed an end-to-end deep network that comprises two functional components. The first component computes a sparse representation of diffusion signals at each voxel via convolutions, where the network structure is constructed by unfolding an iterative optimization process. In the second component, convolutional layers with different kernel sizes are used to compute HR tissue microstructure patches from the LR patches of sparse representation. The weights in the two components are learned jointly. Experiments were performed on brain dMRI data with a reduced number of diffusion gradients and a low spatial resolution, where the proposed approach outperforms competing methods.
KW - Diffusion MRI
KW - Super-resolution
KW - q-Space deep learning
UR - http://www.scopus.com/inward/record.url?scp=85075674984&partnerID=8YFLogxK
U2 - 10.1007/978-3-030-32248-9_65
DO - 10.1007/978-3-030-32248-9_65
M3 - Conference contribution
AN - SCOPUS:85075674984
SN - 9783030322472
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 582
EP - 589
BT - Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings
A2 - Shen, Dinggang
A2 - Yap, Pew-Thian
A2 - Liu, Tianming
A2 - Peters, Terry M.
A2 - Khan, Ali
A2 - Staib, Lawrence H.
A2 - Essert, Caroline
A2 - Zhou, Sean
PB - Springer Science and Business Media Deutschland GmbH
T2 - 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019
Y2 - 13 October 2019 through 17 October 2019
ER -