TY - GEN
T1 - q-Space Learning with Synthesized Training Data
AU - Ye, Chuyang
AU - Cui, Yue
AU - Li, Xiuli
N1 - Publisher Copyright:
© 2019, Springer Nature Switzerland AG.
PY - 2019
Y1 - 2019
N2 - q-Space learning has been developed to improve tissue microstructure estimation on diffusion magnetic resonance imaging (dMRI) scans when only a limited number of diffusion gradients are applied. However, the training samples for q-space learning are obtained from high-quality diffusion signals densely sampled in the q-space, which are acquired on the same scanner of the test scans with a large number of diffusion gradients, and they may not be available for existing or ongoing datasets. In this work, we explore q-space learning with synthesized training data so that it can be applied to datasets where training signals are not available. We seek to synthesize diffusion signals densely sampled in the q-space, whose corresponding undersampled signals should match the distribution of observed undersampled diffusion signals. Specifically, by drawing samples from a simple distribution and feeding them into a generator defined by a multiple layer perceptron, we synthesize the continuous SHORE signal representation, from which both densely sampled and undersampled synthesized diffusion signals can be computed. The weights in the generator are learned by minimizing the distribution difference, which is measured by the maximum mean discrepancy, between the synthesized and observed undersampled signals. In addition, regularization terms are added to discourage unrealistic synthetic signals. With the learned generator, densely sampled diffusion signals can be synthesized for q-space learning. The proposed approach was applied to microstructure estimation on dMRI scans acquired with a limited number of diffusion gradients. The results demonstrate the benefit of using synthetic training signals for q-space learning when actual training data are not acquired.
AB - q-Space learning has been developed to improve tissue microstructure estimation on diffusion magnetic resonance imaging (dMRI) scans when only a limited number of diffusion gradients are applied. However, the training samples for q-space learning are obtained from high-quality diffusion signals densely sampled in the q-space, which are acquired on the same scanner of the test scans with a large number of diffusion gradients, and they may not be available for existing or ongoing datasets. In this work, we explore q-space learning with synthesized training data so that it can be applied to datasets where training signals are not available. We seek to synthesize diffusion signals densely sampled in the q-space, whose corresponding undersampled signals should match the distribution of observed undersampled diffusion signals. Specifically, by drawing samples from a simple distribution and feeding them into a generator defined by a multiple layer perceptron, we synthesize the continuous SHORE signal representation, from which both densely sampled and undersampled synthesized diffusion signals can be computed. The weights in the generator are learned by minimizing the distribution difference, which is measured by the maximum mean discrepancy, between the synthesized and observed undersampled signals. In addition, regularization terms are added to discourage unrealistic synthetic signals. With the learned generator, densely sampled diffusion signals can be synthesized for q-space learning. The proposed approach was applied to microstructure estimation on dMRI scans acquired with a limited number of diffusion gradients. The results demonstrate the benefit of using synthetic training signals for q-space learning when actual training data are not acquired.
KW - Diffusion MRI
KW - Training data synthesis
KW - q-space learning
UR - http://www.scopus.com/inward/record.url?scp=85066912794&partnerID=8YFLogxK
U2 - 10.1007/978-3-030-05831-9_10
DO - 10.1007/978-3-030-05831-9_10
M3 - Conference contribution
AN - SCOPUS:85066912794
SN - 9783030058302
T3 - Mathematics and Visualization
SP - 123
EP - 132
BT - Mathematics and Visualization
A2 - Bonet-Carne, Elisenda
A2 - Grussu, Francesco
A2 - Ning, Lipeng
A2 - Sepehrband, Farshid
A2 - Tax, Chantal M.W.
PB - Springer Heidelberg
T2 - International Workshop on Computational Diffusion MRI, CDMRI 2018 held with International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018
Y2 - 20 September 2018 through 20 September 2018
ER -