K-mer Counting: Memory-efficient strategy, parallel computing and field of application for Bioinformatics

Ming Xiao, Jiakun Li, Song Hong, Yongtao Yang, Junhua Li, Jianxin Wang, Jian Yang, Wenbiao Ding, Le Zhang*

*此作品的通讯作者

科研成果: 书/报告/会议事项章节会议稿件同行评审

5 引用 (Scopus)

摘要

Currently, k-mer counting is an important algorithm for bioinformatics research. This review lists the major application fields of k-mer counting in Bioinformatics at the beginning. Next, we introduce the commonly used memory-efficient strategy for k-mer counting tools, because the large amount of memory request is a bottleneck of k-mer counting tools. Next we illustrate the current parallel computing technologies for k-mer counting tool. Finally, we discuss the future study for k-mer counting.

源语言英语
主期刊名Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
编辑Harald Schmidt, David Griol, Haiying Wang, Jan Baumbach, Huiru Zheng, Zoraida Callejas, Xiaohua Hu, Julie Dickerson, Le Zhang
出版商Institute of Electrical and Electronics Engineers Inc.
2561-2567
页数7
ISBN(电子版)9781538654880
DOI
出版状态已出版 - 21 1月 2019
活动2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 - Madrid, 西班牙
期限: 3 12月 20186 12月 2018

出版系列

姓名Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018

会议

会议2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
国家/地区西班牙
Madrid
时期3/12/186/12/18

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