TY - JOUR
T1 - Imaging depth adaptive resolution enhancement for optical coherence tomography via deep neural network with external attention
AU - Ren, Shangjie
AU - Shen, Xiongri
AU - Xu, Jingjiang
AU - Li, Liang
AU - Qiu, Haixia
AU - Jia, Haibo
AU - Wu, Xining
AU - Chen, Defu
AU - Zhao, Shiyong
AU - Yu, Bo
AU - Gu, Ying
AU - Dong, Feng
N1 - Publisher Copyright:
© 2021 Institute of Physics and Engineering in Medicine.
PY - 2021/10/7
Y1 - 2021/10/7
N2 - Optical coherence tomography (OCT) is a promising non-invasive imaging technique that owns many biomedical applications. In this paper, a deep neural network is proposed for enhancing the spatial resolution of OCT en face images. Different from the previous reports, the proposed can recover high-resolution en face images from low-resolution en face images at arbitrary imaging depth. This kind of imaging depth adaptive resolution enhancement is achieved through an external attention mechanism, which takes advantage of morphological similarity between the arbitrary-depth and full-depth en face images. Firstly, the deep feature maps are extracted by a feature extraction network from the arbitrary-depth and full-depth en face images. Secondly, the morphological similarity between the deep feature maps is extracted and utilized to emphasize the features strongly correlated to the vessel structures by using the external attention network. Finally, the SR image is recovered from the enhanced feature map through an up-sampling network. The proposed network is tested on a clinical skin OCT data set and an open-access retinal OCT dataset. The results show that the proposed external attention mechanism can suppress invalid features and enhance significant features in our tasks. For all tests, the proposed SR network outperformed the traditional image interpolation method, e.g. bi-cubic method, and the state-of-the-art image super-resolution networks, e.g. enhanced deep super-resolution network, residual channel attention network, and second-order attention network. The proposed method may increase the quantitative clinical assessment of micro-vascular diseases which is limited by OCT imaging device resolution.
AB - Optical coherence tomography (OCT) is a promising non-invasive imaging technique that owns many biomedical applications. In this paper, a deep neural network is proposed for enhancing the spatial resolution of OCT en face images. Different from the previous reports, the proposed can recover high-resolution en face images from low-resolution en face images at arbitrary imaging depth. This kind of imaging depth adaptive resolution enhancement is achieved through an external attention mechanism, which takes advantage of morphological similarity between the arbitrary-depth and full-depth en face images. Firstly, the deep feature maps are extracted by a feature extraction network from the arbitrary-depth and full-depth en face images. Secondly, the morphological similarity between the deep feature maps is extracted and utilized to emphasize the features strongly correlated to the vessel structures by using the external attention network. Finally, the SR image is recovered from the enhanced feature map through an up-sampling network. The proposed network is tested on a clinical skin OCT data set and an open-access retinal OCT dataset. The results show that the proposed external attention mechanism can suppress invalid features and enhance significant features in our tasks. For all tests, the proposed SR network outperformed the traditional image interpolation method, e.g. bi-cubic method, and the state-of-the-art image super-resolution networks, e.g. enhanced deep super-resolution network, residual channel attention network, and second-order attention network. The proposed method may increase the quantitative clinical assessment of micro-vascular diseases which is limited by OCT imaging device resolution.
KW - deep neural network
KW - external attention
KW - image super-resolution
KW - optical coherence tomography
KW - optical coherence tomography angiography
UR - http://www.scopus.com/inward/record.url?scp=85116515919&partnerID=8YFLogxK
U2 - 10.1088/1361-6560/ac2267
DO - 10.1088/1361-6560/ac2267
M3 - Article
C2 - 34464947
AN - SCOPUS:85116515919
SN - 0031-9155
VL - 66
JO - Physics in Medicine and Biology
JF - Physics in Medicine and Biology
IS - 19
M1 - 195006
ER -