TY - JOUR
T1 - End-to-End Deep Learning-Based Cells Detection in Microscopic Leucorrhea Images
AU - Hao, Ruqian
AU - Wang, Xiangzhou
AU - Du, Xiaohui
AU - Zhang, Jing
AU - Liu, Juanxiu
AU - Liu, Lin
N1 - Publisher Copyright:
Copyright © The Author(s), 2022. Published by Cambridge University Press on behalf of the Microscopy Society of America.
PY - 2022/6/18
Y1 - 2022/6/18
N2 - Vaginitis is a prevalent gynecologic disease that threatens millions of women's health. Although microscopic examination of vaginal discharge is an effective method to identify vaginal infections, manual analysis of microscopic leucorrhea images is extremely time-consuming and labor-intensive. To automate the detection and identification of visible components in microscopic leucorrhea images for early-stage diagnosis of vaginitis, we propose a novel end-to-end deep learning-based cells detection framework using attention-based detection with transformers (DETR) architecture. The transfer learning was applied to speed up the network convergence while maintaining the lowest annotation cost. To address the issue of detection performance degradation caused by class imbalance, the weighted sampler with on-the-fly data augmentation module was integrated into the detection pipeline. Additionally, the multi-head attention mechanism and the bipartite matching loss system of the DETR model perform well in identifying partially overlapping cells in real-time. With our proposed method, the pipeline achieved a mean average precision (mAP) of 86.00% and the average precision (AP) of epithelium, leukocyte, pyocyte, mildew, and erythrocyte was 96.76, 83.50, 74.20, 89.66, and 88.80%, respectively. The average test time for a microscopic leucorrhea image is approximately 72.3 ms. Currently, this cell detection method represents state-of-the-art performance.
AB - Vaginitis is a prevalent gynecologic disease that threatens millions of women's health. Although microscopic examination of vaginal discharge is an effective method to identify vaginal infections, manual analysis of microscopic leucorrhea images is extremely time-consuming and labor-intensive. To automate the detection and identification of visible components in microscopic leucorrhea images for early-stage diagnosis of vaginitis, we propose a novel end-to-end deep learning-based cells detection framework using attention-based detection with transformers (DETR) architecture. The transfer learning was applied to speed up the network convergence while maintaining the lowest annotation cost. To address the issue of detection performance degradation caused by class imbalance, the weighted sampler with on-the-fly data augmentation module was integrated into the detection pipeline. Additionally, the multi-head attention mechanism and the bipartite matching loss system of the DETR model perform well in identifying partially overlapping cells in real-time. With our proposed method, the pipeline achieved a mean average precision (mAP) of 86.00% and the average precision (AP) of epithelium, leukocyte, pyocyte, mildew, and erythrocyte was 96.76, 83.50, 74.20, 89.66, and 88.80%, respectively. The average test time for a microscopic leucorrhea image is approximately 72.3 ms. Currently, this cell detection method represents state-of-the-art performance.
KW - attention mechanism
KW - automatic detection
KW - data augmentation
KW - deep learning
KW - microscopic leucorrhea images
KW - transfer learning
KW - transformer
UR - http://www.scopus.com/inward/record.url?scp=85125792961&partnerID=8YFLogxK
U2 - 10.1017/S1431927622000265
DO - 10.1017/S1431927622000265
M3 - Article
AN - SCOPUS:85125792961
SN - 1431-9276
VL - 28
SP - 732
EP - 743
JO - Microscopy and Microanalysis
JF - Microscopy and Microanalysis
IS - 3
ER -