TY - JOUR
T1 - Dynamic mutation late acceptance hill climbing aided red fox optimization for metabolomic biomarkers selection from lung cancer patient sera
AU - Guo, Shuli
AU - Zhao, Zhilei
AU - Han, Lina
AU - Wu, Lei
AU - Song, Xiaowei
AU - Cekderi, Anil Baris
N1 - Publisher Copyright:
© 2024 Elsevier B.V.
PY - 2024/7
Y1 - 2024/7
N2 - The accurate selection of serum metabolomic biomarkers for early lung cancer screening remains a significant challenge in the clinical context. Consequently, this study introduces the Red Fox Optimization (RFO) that integrates Dynamic Mutation Late Acceptance Hill Climbing (DM-LAHC), with the aim of selecting a panel of serum metabolomic biomarkers suitable for distinguishing between benign and malignant pulmonary nodules. The key innovation is the dynamic adjustment of the mutation probability in the Late Acceptance Hill Climbing algorithm, which greatly enhances the local search capabilities. And the RFO's reproduction mechanism has been improved through the utilization of a more efficient interpolation form. The biomarker selection model employs a multi-objective fitness function that takes into account both accuracy and quantity. After this, the optimal model yielded a biomarker panel, including Inosine, Hippuric acid, Alanine, and other metabolites. This model demonstrates outstanding performance on an independent test dataset, achieving a fitness value of 0.9136, an AUC (Area Under the Curve) of 0.9926, a sensitivity of 0.9643, and a specificity of 0.9412. Furthermore, the clinical net benefit is highlighted across various risk thresholds by decision curve analysis. These results underscore the significance of DM-LAHC aided RFO in the selection of serum metabolomic biomarkers for lung cancer. The supporting source codes of this work can be found at: https://github.com/zzl2022/DM-LAHC-aided-RFO.
AB - The accurate selection of serum metabolomic biomarkers for early lung cancer screening remains a significant challenge in the clinical context. Consequently, this study introduces the Red Fox Optimization (RFO) that integrates Dynamic Mutation Late Acceptance Hill Climbing (DM-LAHC), with the aim of selecting a panel of serum metabolomic biomarkers suitable for distinguishing between benign and malignant pulmonary nodules. The key innovation is the dynamic adjustment of the mutation probability in the Late Acceptance Hill Climbing algorithm, which greatly enhances the local search capabilities. And the RFO's reproduction mechanism has been improved through the utilization of a more efficient interpolation form. The biomarker selection model employs a multi-objective fitness function that takes into account both accuracy and quantity. After this, the optimal model yielded a biomarker panel, including Inosine, Hippuric acid, Alanine, and other metabolites. This model demonstrates outstanding performance on an independent test dataset, achieving a fitness value of 0.9136, an AUC (Area Under the Curve) of 0.9926, a sensitivity of 0.9643, and a specificity of 0.9412. Furthermore, the clinical net benefit is highlighted across various risk thresholds by decision curve analysis. These results underscore the significance of DM-LAHC aided RFO in the selection of serum metabolomic biomarkers for lung cancer. The supporting source codes of this work can be found at: https://github.com/zzl2022/DM-LAHC-aided-RFO.
KW - Biomarker selection
KW - Dynamic mutation late acceptance hill climbing
KW - Early screening
KW - Lung cancer
KW - Red fox optimization
UR - http://www.scopus.com/inward/record.url?scp=85190499123&partnerID=8YFLogxK
U2 - 10.1016/j.asoc.2024.111602
DO - 10.1016/j.asoc.2024.111602
M3 - Article
AN - SCOPUS:85190499123
SN - 1568-4946
VL - 159
JO - Applied Soft Computing
JF - Applied Soft Computing
M1 - 111602
ER -