Discovery and engineering of ChCas12b for precise genome editing

Jingjing Wei, Jingtong Liu, Yuwen Tian, Ziwen Wang, Linghui Hou, Yuan Yang, Chen Tao, Miaomiao Li, Bao Qing Gao, Huanyu Zhou, Xixi Zheng, Junnan Tang, Song Gao, Li Yang, Renjie Chai*, Yongming Wang

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

Many clustered regularly interspaced short palindromic repeat and CRISPR-associated protein 12b (CRISPR-Cas12b) nucleases have been computationally identified, yet their potential for genome editing remains largely unexplored. In this study, we conducted a GFP-activation assay screening 13 Cas12b nucleases for mammalian genome editing, identifying five active candidates. Candidatus hydrogenedentes Cas12b (ChCas12b) was found to recognize a straightforward WTN (W = T or A) proto-spacer adjacent motif (PAM), thereby dramatically expanding the targeting scope. Upon optimization of the single guide RNA (sgRNA) scaffold, ChCas12b exhibited activity comparable to SpCas9 across a panel of nine endogenous loci. Additionally, we identified nine mutations enhancing ChCas12b specificity. More importantly, we demonstrated that both ChCas12b and its high-fidelity variant, ChCas12b-D496A, enabled allele-specific disruption of genes harboring single nucleotide polymorphisms (SNPs). These data position ChCas12b and its high-fidelity counterparts as promising tools for both fundamental research and therapeutic applications.

Original languageEnglish
Pages (from-to)3260-3271
Number of pages12
JournalScience Bulletin
Volume69
Issue number20
DOIs
Publication statusPublished - 30 Oct 2024
Externally publishedYes

Keywords

  • Allele-specific disruption
  • CRISPR/Cas12b
  • ChCas12b-D496A
  • Genome editing

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