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Hypergraph Foundation Model

  • Yue Gao
  • , Yifan Feng
  • , Shiquan Liu
  • , Xiangmin Han
  • , Shaoyi Du
  • , Zongze Wu*
  • , Han Hu*
  • *Corresponding author for this work
  • Tsinghua University
  • Xi'an Jiaotong University
  • Shenzhen University

Research output: Contribution to journalArticlepeer-review

Abstract

Hypergraph neural networks (HGNNs) effectively model complex high-order relationships in domains like protein interactions and social networks by connecting multiple vertices through hyperedges, enhancing modeling capabilities, and reducing information loss. Developing foundation models for hypergraphs is challenging due to their distinct data, which includes both vertex features and intricate structural information. We present Hyper-FM, a Hypergraph Foundation Model for multi-domain knowledge extraction, featuring Hierarchical High-Order Neighbor Guided Vertex Knowledge Embedding for vertex feature representation and Hierarchical Multi-Hypergraph Guided Structural Knowledge Extraction for structural information. Additionally, we curate 11 text-attributed hypergraph datasets to advance research between HGNNs and LLMs. Experiments on these datasets show that Hyper-FM outperforms baseline methods by approximately 13.4%, validating our approach. Furthermore, we propose the first scaling law for hypergraph foundation models, demonstrating that increasing domain diversity significantly enhances performance, unlike merely augmenting vertex and hyperedge counts. This underscores the critical role of domain diversity in scaling hypergraph models.

Original languageEnglish
Pages (from-to)4063-4080
Number of pages18
JournalIEEE Transactions on Pattern Analysis and Machine Intelligence
Volume48
Issue number4
DOIs
Publication statusPublished - 2026

Keywords

  • Hypergraph neural networks
  • foundation model
  • high-order learning
  • hypergraph learning

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