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Discrimination of attractors with noisy nodes in Boolean networks

  • Xiaoqing Cheng
  • , Wai Ki Ching
  • , Sini Guo
  • , Tatsuya Akutsu*
  • *Corresponding author for this work
  • School of Mathematics and Statistics
  • The University of Hong Kong
  • Kyoto University

Research output: Contribution to journal › Article › peer-review

Abstract

Observing the internal state of the whole system using a small number of sensor nodes is important in analysis of complex networks. Here, we study the problem of determining the minimum number of sensor nodes to discriminate attractors under the assumption that each attractor has at most K noisy nodes. We present exact and approximation algorithms for this minimization problem. The effectiveness of the algorithms is also demonstrated by computational experiments using both synthetic data and realistic biological data.

Original languageEnglish
Article number109630
JournalAutomatica
Volume130
DOIs
Publication statusPublished - Aug 2021
Externally publishedYes

Keywords

  • Attractors
  • Biomarkers
  • Boolean networks
  • Genetic networks
  • Observability

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