TY - JOUR
T1 - Adaptive Gaussian representation for differentiable cryo-electron tomography reconstruction
AU - Zhang, Chi
AU - Yang, Zhidong
AU - Han, Renmin
AU - Zhang, Fa
AU - Feng, Jieqing
N1 - Publisher Copyright:
© 2025 Elsevier Inc.
PY - 2026/3
Y1 - 2026/3
N2 - Cryo-electron tomography (cryo-ET) enables 3D visualization of biological structures in their native state, but high-fidelity tomogram reconstruction remains challenging due to low signal-to-noise ratios and limited angular sampling. In this work, we present CryoETGS, a differentiable learning framework that reconstructs tomograms through adaptive 3D Gaussian representations of biological structures for cryo-ET. This representation enables efficient and interpretable reconstruction through a hardware-accelerated differentiable rendering pipeline aligned with the cryo-ET imaging geometry. CryoETGS incorporates hierarchical initialization, adaptive densification, and a tilt-weighted optimization strategy to enhance convergence and reconstruction fidelity. The framework further supports real-time projection synthesis and bidirectional conversion between voxel-based and Gaussian representations. Extensive experiments on both simulated and experimental datasets demonstrate that CryoETGS achieves state-of-the-art reconstruction performance, effectively mitigates missing wedge artifacts, and exhibits high computational efficiency. Source code is publicly available at https://github.com/JachyLikeCoding/ETGS.
AB - Cryo-electron tomography (cryo-ET) enables 3D visualization of biological structures in their native state, but high-fidelity tomogram reconstruction remains challenging due to low signal-to-noise ratios and limited angular sampling. In this work, we present CryoETGS, a differentiable learning framework that reconstructs tomograms through adaptive 3D Gaussian representations of biological structures for cryo-ET. This representation enables efficient and interpretable reconstruction through a hardware-accelerated differentiable rendering pipeline aligned with the cryo-ET imaging geometry. CryoETGS incorporates hierarchical initialization, adaptive densification, and a tilt-weighted optimization strategy to enhance convergence and reconstruction fidelity. The framework further supports real-time projection synthesis and bidirectional conversion between voxel-based and Gaussian representations. Extensive experiments on both simulated and experimental datasets demonstrate that CryoETGS achieves state-of-the-art reconstruction performance, effectively mitigates missing wedge artifacts, and exhibits high computational efficiency. Source code is publicly available at https://github.com/JachyLikeCoding/ETGS.
KW - 3D reconstruction
KW - Cryo-electron tomography
KW - Differentiable reconstruction
KW - Gaussian representation
KW - Missing wedge correction
UR - https://www.scopus.com/pages/publications/105025192012
U2 - 10.1016/j.jsb.2025.108281
DO - 10.1016/j.jsb.2025.108281
M3 - Article
AN - SCOPUS:105025192012
SN - 1047-8477
VL - 218
JO - Journal of Structural Biology
JF - Journal of Structural Biology
IS - 1
M1 - 108281
ER -