A new method for remote protein classification

Yu Gang Li; Zhi Yong Liu; Fa Zhang; Zhen Ge Qiu

doi:10.1109/BMEI.2009.5302560

A new method for remote protein classification

Yu Gang Li^*
, Zhi Yong Liu
, Fa Zhang
, Zhen Ge Qiu

^*Corresponding author for this work

Beijing Institute of Technology
CAS - Institute of Computing Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

Protein classification is an important research topic in Bioinformatics. The Support Vector Machine (SVM) based methods, e.g. the SVM-PSV algorithm, are among the most successful ones. Based on our current work, this paper presents an alternative algorithm, the LS-StaticEField algorithm, for protein classification. The LS-StaticEField algorithm is more efficient to compute than SVM based ones and provides satisfying accuracy performance when compared with the SVM-PSV method in the experiments of homology detection based on the SCOP database.

Original language	English
Title of host publication	Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009
Publisher	IEEE Computer Society
ISBN (Print)	9781424441341
DOIs	https://doi.org/10.1109/BMEI.2009.5302560
Publication status	Published - 2009
Externally published	Yes
Event	2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Held in conjunction with the 2nd International Congress on Image and Signal Processing, CISP 2009 - Tianjin, China Duration: 17 Oct 2009 → 19 Oct 2009

Publication series

Name	Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009

Conference

Conference	2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Held in conjunction with the 2nd International Congress on Image and Signal Processing, CISP 2009
Country/Territory	China
City	Tianjin
Period	17/10/09 → 19/10/09

Keywords

Bioinformatics
LS-StaticEField
SCOP
SVM

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10.1109/BMEI.2009.5302560

Cite this

Li, Y. G., Liu, Z. Y., Zhang, F., & Qiu, Z. G. (2009). A new method for remote protein classification. In Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009 Article 5302560 (Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009). IEEE Computer Society. https://doi.org/10.1109/BMEI.2009.5302560

@inproceedings{b555e4cb567848508d3b7073f30cd743,

title = "A new method for remote protein classification",

abstract = "Protein classification is an important research topic in Bioinformatics. The Support Vector Machine (SVM) based methods, e.g. the SVM-PSV algorithm, are among the most successful ones. Based on our current work, this paper presents an alternative algorithm, the LS-StaticEField algorithm, for protein classification. The LS-StaticEField algorithm is more efficient to compute than SVM based ones and provides satisfying accuracy performance when compared with the SVM-PSV method in the experiments of homology detection based on the SCOP database.",

keywords = "Bioinformatics, LS-StaticEField, SCOP, SVM",

author = "Li, \{Yu Gang\} and Liu, \{Zhi Yong\} and Fa Zhang and Qiu, \{Zhen Ge\}",

year = "2009",

doi = "10.1109/BMEI.2009.5302560",

language = "English",

isbn = "9781424441341",

series = "Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009",

publisher = "IEEE Computer Society",

booktitle = "Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009",

address = "United States",

note = "2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Held in conjunction with the 2nd International Congress on Image and Signal Processing, CISP 2009 ; Conference date: 17-10-2009 Through 19-10-2009",

}

Li, YG, Liu, ZY, Zhang, F & Qiu, ZG 2009, A new method for remote protein classification. in Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009., 5302560, Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, IEEE Computer Society, 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Held in conjunction with the 2nd International Congress on Image and Signal Processing, CISP 2009, Tianjin, China, 17/10/09. https://doi.org/10.1109/BMEI.2009.5302560

A new method for remote protein classification. / Li, Yu Gang; Liu, Zhi Yong; Zhang, Fa et al.
Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009. IEEE Computer Society, 2009. 5302560 (Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - A new method for remote protein classification

AU - Li, Yu Gang

AU - Liu, Zhi Yong

AU - Zhang, Fa

AU - Qiu, Zhen Ge

PY - 2009

Y1 - 2009

N2 - Protein classification is an important research topic in Bioinformatics. The Support Vector Machine (SVM) based methods, e.g. the SVM-PSV algorithm, are among the most successful ones. Based on our current work, this paper presents an alternative algorithm, the LS-StaticEField algorithm, for protein classification. The LS-StaticEField algorithm is more efficient to compute than SVM based ones and provides satisfying accuracy performance when compared with the SVM-PSV method in the experiments of homology detection based on the SCOP database.

AB - Protein classification is an important research topic in Bioinformatics. The Support Vector Machine (SVM) based methods, e.g. the SVM-PSV algorithm, are among the most successful ones. Based on our current work, this paper presents an alternative algorithm, the LS-StaticEField algorithm, for protein classification. The LS-StaticEField algorithm is more efficient to compute than SVM based ones and provides satisfying accuracy performance when compared with the SVM-PSV method in the experiments of homology detection based on the SCOP database.

KW - Bioinformatics

KW - LS-StaticEField

KW - SCOP

KW - SVM

UR - https://www.scopus.com/pages/publications/74049140391

U2 - 10.1109/BMEI.2009.5302560

DO - 10.1109/BMEI.2009.5302560

M3 - Conference contribution

AN - SCOPUS:74049140391

SN - 9781424441341

T3 - Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009

BT - Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009

PB - IEEE Computer Society

T2 - 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009, Held in conjunction with the 2nd International Congress on Image and Signal Processing, CISP 2009

Y2 - 17 October 2009 through 19 October 2009

ER -

A new method for remote protein classification

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